Hawkesbury Institute for the Environment

Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG, (2007) ‘Basidiomycete fungal communities in Australian sclerophyll forest soil are altered by repeated prescribed burning’, Mycological Research, vol.111, pp 482-486

Anderson IC, Cairney JWG, (2007) ‘Ectomycorrhizal fungi: exploring the mycelial frontier’, FEMS Microbiology Reviews, vol.31, pp 388-406

Anderson IC, Parkin PI, (2007) ‘Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules’, Journal of Microbiological Methods, vol. 68, pp 248-253

Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD, (2007) ‘Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands’, Microbial Ecology, vol.54, pp 508-522

Atwell BJ, Henery ML, Rogers GS, Seneweera SP, Treadwell M, Conroy JP, (2007) ‘Canopy development and hydraulic function in Eucalyptus tereticornis grown in drought in CO₂-enriched atmospheres’, Functional Plant Biology, vol.34, no.12, pp 1137-1149

Bastias BA, Anderson IC, Xu ZH, Cairney JWG, (2007) ‘RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation’, Soil Biology and Biochemistry, vol.39, pp 3108-3114

Bougoure DS, Parkin PI, Cairney JWG, Alexander IJ, Anderson IC, (2007) ‘Diversity of fungi in hair roots of Ericaceae varies along a vegetation gradient’, Molecular Ecology, vol.16, pp 4624-4636

Cairney JWG, Bastias BA, (2007) ‘Influences of fire on forest soil fungal communities’, Canadian Journal of Forest Research, vol.37, pp 207-215

Choat B, Sack L, Holbrook NM, (2007) 'Diversity of hydraulic traits in nine Cordia species growing in tropical rainforests with contrasting precipitation', New Phytologist, vol.175, no.4, pp 686-698

Chung H, Zak DR, Ellsworth DS, Reich PB, (2007) 'Declining plant species richness, elevated CO₂, and atmospheric N deposition alter soil microbial community composition and function', Global Change Biology, vol.13, pp 980-989

Chung H, Zak DR, Reich PB, Ellsworth DS, (2007) ‘Plant species richness, elevated CO₂, and atmospheric nitrogen deposition alter soil microbial community composition and function’ Global Change Biology, vol.13, pp 1-10

Cobb AR, Choat B, Holbrook NM, (2007) 'Dynamics of freeze-thaw embolism in Smilax rotundifolia (Smilacaceae)', American Journal of Botany, vol.94, no.4, pp 640–649

DeLucia EH, Drake JE, Thomas RB, Gonzalez-Meler M, (2007) 'Forest carbon-use-efficiency: is respiration a constant fraction of gross primary production?', Global Change Biology, vol.13, no.6, pp 1157-1167

Doody JS, Sims R, Letnic M, (2007) ‘Environmental manipulation to avoid a unique predator: drinking hole excavation in the agile wallaby, Macropus agilis’, Ethology, vol.113, pp 128-136

Dwyer SA, Ghannoum O, Nicotra A, Von Caemmerer S, (2007) ‘High temperature acclimation of C₄ photosynthesis is linked to changes in photosynthetic biochemistry’ Plant Cell and Environment, vol.30, pp 53-66

Fransson PMA, Anderson IC, Alexander IJ, (2007) ‘Does carbon partitioning in ectomycorrhizal pine seedlings under elevated CO₂ vary with fungal species?’, Plant and Soil, vol.291, pp 323-333

Fransson PMA, Anderson IC, Alexander IJ, (2007) ‘Ectomycorrhizal fungi in culture respond differently to increased carbon availability’. FEMS Microbiology Ecology, vol.61, pp 246-257

Ghannoum O, Conroy J, (2007) 'Phosphorus deficiency inhibits growth in parallel with photosynthesis in a C₃ (Panicum laxum) but not two C₄ (P. coloratum and Cenchrus ciliaris) grasses', Functional Plant Biology, vol.34, no.1, pp 72-81

Gulden RH, Levy-Booth D, Campbell R, Powell JR, Hart MM, Trevors JT, Pauls KP, Klironomos JN, Swanton CJ, (2007) ‘An empirical approach to absolute target DNA quantification in environmental samples using single polymerase chain reactions’, Soil Biology and Biochemistry, vol.39, pp 1956-1967

Hogg AH, Uddling J, Ellsworth DS, Carroll M, Pressley S, Lamb B, Vogel C, (2007) 'Stomatal and non-stomatal fluxes of ozone to a northern mixed hardwood forest', Tellus Series B, vol.59B, pp 514-525

Izumi H, Moore ERB, Killham K, Alexander IJ, Anderson IC, (2007) ‘Characterisation of endobacterial communities in ectomycorrhizas by DNA and RNA based molecular methods’, Soil Biology and Biochemistry, vol.39, pp 891-899

Jansen S, Sano Y, Choat B, Rabaey D, Lens F, Dute RR, (2007) 'Pit membranes in tracheary elements of Rosaceae and related families: new records of tori and pseudo-tori',  American Journal of Botany, vol.94, no.4, pp 503–514

Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang XX, (2007) ‘Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems’, Agricultural and Forest Entomology, vol.9, no.1, pp 39–46

Johnson SN, Zhang X, Crawford JW, Gregory PJ, Young IM, (2007) ‘Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation’, Ecological Modelling, vol.202, nos.3-4, pp 493–502

Kennedy PG, Bergemann SE, Hortal S, Bruns TD, (2007) 'Determining the outcome of field-based competition between two Rhizopogon species using real-time PCR', Molecular Ecology, vol.16, pp 881-890

Kennedy PG, Hortal S, Bergemann SE, Bruns TD, (2007) 'Competitive interactions among three ectomycorrhizal fungi and their relation to host plant performance', Journal of Ecology, vol.95, pp 1338-1345

Lerat S, Gulden RH, Hart MM, Powell JR, England LS, Pauls KP, Swanton CJ, Klironomos JN, Trevors JT, (2007) ‘Quantification and persistence of recombinant DNA of Roundup Ready corn and soybean in rotation’, Journal of Agricultural and Food Chemistry, vol.55, pp 10226-10231

Letnic M (2007) 'The pastoral industry: history and impact on arid zone fauna', in Lunney D and Dickman CR (eds). Animals of arid Australia: out on their own? Royal Zoological Society of New South Wales, pp 65-76

Levy-Booth DJ, Campbell RG, Gulden RH, Hart MM, Powell JR, Klironomos JN, Pauls KP, Swanton CJ, Trevors JT, Dunfield KE, (2007) ‘Cycling of extracellular DNA in the soil environment’, Soil Biology and Biochemistry, vol.39, pp 2977-2991

Macdonald C, Singh BK, Campbell C, Horsewell J, Spier T, (2007) ‘Long-term exposure to Zn-spiked sewage sludge alters soil community structure’, Soil Biology and Biochemistry, vol.39, no.10, pp 2576-2586

McCarthy HR, Oren R, Finzi AC, Ellsworth DS, Kim H-S, Johnsen KH, Millar B, (2007) 'Temporal dynamics and spatial variability in the enhancement of canopy leaf area under elevated atmospheric CO₂', Global Change Biology, vol.13, no.12, pp 2479-2497

Milham PJ, Payne TE, Lai B, Trautman, RL, Cai Z, Holford P, Haigh AM, Conroy JP, (2007) 'Can synchrotron micro-X-ray fluorescence spectroscopy be used to map the distribution of cadmium in soil particles?', Australian Journal of Soil Research, vol.45, pp 624-628

Niklas KJ, Cobb ED, Niinemets Ü, Reich PB, Sellin A, Shipley B, Wright IJ, (2007) ‘“Diminishing returns” in function with increasing leaf mass across and within six species-groups’, Proceedings of National Academy of Sciences (USA), vol.104, no.21, pp 8891-8896

Parladé J, Hortal S, Pera J, Galipienso L, (2007) 'Quantitative detection of Lactarius deliciosus extraradical soil mycelium by real-time PCR and its application in the study of fungal persistence and interspecific competition', Journal of Biotechnology, vol.128, pp 14-23

Patrick L, Cable J, Ignace D, Potts D, Barron-Gafford G, Van Gestel N, Robertson T, Alpert H, Griffith A, Huxman T, Zak J, Loik M, Tissue D, (2007) 'Effects of an increase in summer precipitation on leaf, soil and ecosystem fluxes of CO₂ and H₂O in a sotol-grassland in Big Bend National Park, Texas', Oecologia, vol.151, pp 704-718

Phillips P, Hauser P, Letnic M, (2007) Displacement of Black Flying Foxes (Pteropus alecto) from Batchelor, Northern Territory’, Australian Zoologist, vol.13, pp 119-124

Powell JR (2007) ‘Linking soil organisms within food webs to ecosystem functioning and environmental change’, Advances in Agronomy, vol.96, pp 307-350

Powell JR, Dunfield KE, (2007) ‘Non-target impacts of genetically-modified, herbicide-tolerant crops on soil microbial and faunal communities’, pages 127-137, in The First Decade of Herbicide-Resistant Crops in Canada, Topics in Canadian Weed Science, vol. 4 (R.H. Gulden and C.J. Swanton, Eds), Canadian Weed Science Society – Société canadienne de malherbologie: Sainte Anne de Bellevue, QC

Powell JR, Gulden RH, Hart MM, Campbell RG, Levy-Booth DJ, Dunfield KE, Pauls KP, Swanton CJ, Trevors JT, Klironomos JN, (2007) ‘Mycorrhizal and rhizobial colonization of genetically-modified and conventional soybeans’, Applied and Environmental Microbiology, vol.73, no.13, pp 4365-4367

Powell JR, Klironomos JN, (2007) ‘The ecology of plant-microbial mutualisms’, Chapter 10 in Soil Microbiology, Ecology, and Biochemistry, 3rd ed. (Paul EA, Ed.), Academic Press

Riegler M, O’Neill SL, (2007) 'Evolutionary dynamics of insect symbiont associations', Trends in Ecology and Evolution, vol.22, pp 625-627

Rossetto M, Crayn D, Ford A, Ridgeway P, Rymer PD, (2007) ‘The comparative study of range-wide genetic structure across related, co-distributed rainforest trees reveals contrasting evolutionary histories’, Australian Journal of Botany, vol.55, no.4, pp 416-424

Saari TA, Saari SK, Campbell CD, Alexander IJ, Anderson IC, (2007) ‘FragMatch – a program for the analysis of DNA fragment data’, Mycorrhiza, vol.17, pp 133-136

Sefcik LT, Zak DR, Ellsworth DS, (2007) 'Seedling survival in a northern temperate forest understory is increased by elevated atmospheric CO₂ and atmospheric N deposition', vol.13, pp 132-146

Singh BK, Munro S, Potts J, Millard P, (2007) ‘Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils’, Applied Soil Ecology, vol.36, pp 147-155

Singh BK, Tate KR, Kapadia G, Hedley CB, Macdonald CA, Millard P, Murrell JC, (2007) ‘Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria’, Applied and Environmental Microbiology, vol.73, pp 5153-5161

Singh BK, Tate KR, (2007) ‘Biochemical and molecular characterization of methanotrophs in soil from a pristine New Zealand beech forest’, FEMS Microbiology Letters. Vol.275, pp 87-97

Stuart SA, Choat B, Martin K, Holbrook NM, Ball MC, (2007) 'The role of freezing in defining the latitudinal limits of mangrove forests', New Phytologist, vol.173, no.3, pp 576-583

Szubert M, Reiff C, Thorburn A, Singh BK, (2007) ‘REMA: A Computer-based mapping tool for analysis of restriction sites in multiple DNA sequence’, Journal of Microbiological Methods, vol.69, pp 411-413

Tate K, Ross DJ, Saggar S, Hedley CB, Dando J, Singh BK, Lambie SM, (2007) ‘Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: Effects of land-use change, and soil texture, water and mineral nitrogen’, Soil Biology and Biochemistry, vol.39, pp1437-1449

Thomas D, Montagu K, Conroy J, (2007) 'Temperature effects on wood anatomy, wood density, photosynthesis and biomass partitioning of Eucalyptus grandis seedlings', Tree Physiology, vol.27, no.2, pp 251-260

Tibbett M, Cairney JWG, (2007) 'The cooler side of mycorrhizas: their occurrence and functioning at low temperatures', Canadian Journal of Botany, vol.85, pp 51-62

Whitney SM, Sharwood RE, (2007) ‘Linked Rubisco subunits can assemble into functional oligomers without impeding catalytic performance’, Journal of Biological Chemistry , vol.282, no.6, pp 3809-3818

Yamada R, Floate KD, Riegler M, O’Neill SL, (2007) 'Male development time influences the strength of Wolbachia-induced cytoplasmic incompatibility expression in Drosophila melanogaster', Genetics, vol.177, pp 801-808

Zak DR, Holmes WE, Pregitzer KS, King JS, Ellsworth DS, Kubiske ME, (2007) 'Belowground competition and the response of developing forest communities to atmospheric CO₂ and O₃', Global Change Biology, vol.13, no.10, pp 2230-2238

Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM, (2007) ‘A general random walk model for the leptokurtic distribution of organism movement: theory and application’, Ecological Modelling, vol.200, nos.1-2, pp 79–88