Doctor Glenn Stone

Journal Articles

• Stone, G., Clifford, D., Clifford, D. and Stone, G. (2012), 'Variable Penalty Dynamic Time Warping Code for Aligning Mass Spectrometry Chromatograms in R', Journal of Statistical Software, .
• Stone, G., Clifford, D., Clifford, D. and Stone, G. (2012), 'Variable Penalty Dynamic Time Warping Code for Aligning Mass Spectrometry Chromatograms in R', Journal of Statistical Software, .
• Bragg, L., Stone, G., Stone, G., Imelfort, M., Hugneholtz, P. and Tyson, G. (2012), 'Fast, accurate error-correction of amplicon pyrosequences using Acacia', Nature Methods, 2.
• Stone, G. (2012), 'Visualisation in imaging mass spectrometry using the minimum noise fraction transform', BMC Research Notes, .
• Stone, G., Clifford, D., Gustafsson, J., McColl, S. and Hoffmann, P. (2012), 'Visualisation in imaging mass spectrometry using the minimum noise fraction transform', BMC Research Notes, .
• Clifford, D. and Stone, G. (2012), 'Variable penalty dynamic time warping code for aligning mass spectrometry chromatograms in R', Journal of Statistical Software, .
• Bragg, L., Stone, G., Imelfort, M., Hugneholtz, P. and Tyson, G. (2012), 'Fast, accurate error-correction of amplicon pyrosequences using Acacia', Nature Methods, 2.
• Humburg, P., Helliwell, C., Bulgar, D. and Stone, G. (2011), 'Chipseqr: Analysis of chip-seq experiments', BMC Bioinformatics, .
• Reja, V., Kwok, A., Stone, G., Yang, L., Bassam, B., Missel, A. and Menzel, C. (2010), 'ScreenClust: Advanced statistical software for supervised and unsupervised high resolution melting (HRM) analysis', Methods, 5.
• Humburg, P., Bulgar, D. and Stone, G. (2010), 'A framework for the simulation of chip-seq experiments with applications to nucleosome positioning', BMC Bioinformatics, .
• Clifford, D., Stone, G., Montoliu, I., Rezzi, S., Martin, F., Guy, P., Bruce, S. and Kochhar, S. (2009), 'Alignment using variable penalty dynamic time warping', Analytical Chemistry, 8.
• Bragg, L. and Stone, G. (2009), 'k-link est clustering: evaluating error introduced by chimeric sequences under degrees of linkage', Bioinformatics, 7.
• Stone, G., Chapman, B. and Lovell, D. (2009), 'Development of a log-quadratic model to describe microbial inactivation, illustrated by thermal inactivation of clostridium botulinum', Applied and Environmental Microbiology, 8.
• Mitchell, C., Nelson, A., Cowley, M., Kaplan, W., Stone, G., Sutton, S., Lau, A., Lee, C. and Ho, K. (2009), 'Detection of growth hormone doping by gene expression profiling of peripheral blood', Journal of Clinical Endocrinology and Metabolism, 7.
• Humburg, P., Bulgar, D. and Stone, G. (2008), 'Parameter estimation for robust hmm analysis of chip-chip data.', BMC Bioinformatics, .
• Nelson, A., Handelsman, D., Kazlauskas, R., Ho, K., Meinhardt, U., Hansen, J., Walker, I., Stone, G., Howe, C., Leung, K., Seibel, M. and Baxter, R. (2008), 'Pharmacodynamics of growth hormone abuse biomarkers and the influence of gender and testosterone: A randomized double-blind placebo-controlled study in young recreational athletes', Journal of Clinical Endocrinology and Metabolism, 10.
• Payne, C., Biggs, M., Little, N., Teo, C., Robinson, B., McDonald, K., Maleki, S., Messina, M., O'Sullivan, M., Stone, G., Hall, N., Parkinson, J., Wheeler, H. and Cook, R. (2008), 'Loss of prostaglandin d-2 synthase: a key molecular event in the transition of a low-grade astrocytoma to an anaplastic astrocytoma', Molecular Cancer Therapeutics, 9.
• Wynne, J., O'Sullivan, M., Cook, M., Stone, G., Nowak, B., Lovell, D. and Elliott, N. (2008), 'Transcriptome analyses of amoebic gill disease-affected atlantic salmon (salmo salar) tissues reveal localized host gene suppression', Marine Biotechnology, 16.
• Wynne, J., O'Sullivan, M., Stone, G., Cook, M., Nowak, B., Lovell, D., Taylor, R. and Elliott, N. (2008), 'Resistance to amoebic gill disease (agd) is characterised by the transcriptional dysregulation of immune and cell cycle pathways.', Developmental and Comparative Immunology, 22.
• Kassahn, K., Caley, M., Ward, A., Connolly, A., Stone, G. and Crozier, R. (2007), 'Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish', Molecular Ecology, 15.
• Kassahn, K., Crozier, R., Ward, A., Stone, G. and Caley, M. (2007), 'From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish pomacentrus moluccensis', BMC Genomics, .
• Mcdonald, K., Cook, R., Biggs, M., Little, N., Teo, C., Stone, G., Robinson, B., O'Sullivan, M., Parkinson, J., Shaw, J., Payne, C., Brewer, J., Young, L., Reader, D. and Wheeler, H. (2007), 'Iqgap1 and igfbp2: Valuable biomarkers for determining prognosis in glioma patients', Journal of Neuropathology and Experimental, 13.